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Daniel Dunkelmann

As a Branco Weiss Fellow, Dr. Daniel Dunkelmann will create a synthetic chloroplast genome in a living plant. By using a genetic code that is incompatible with the natural one, his research aims to develop technology to bio-contain synthetic genetic elements in highly engineered plants. These plants may be designed to address challenges related to food security and climate change.

Background

Nationality
Switzerland

Academic Career

  • Post Doc, Max Planck Institute for Molecular Plant Physiology, Potsdam-Golm, Germany, 2022–present
  • Junior Research Fellow, Magdalene College, Cambridge, United Kingdom, 2021–2024
  • PhD in Synthetic Biology, University of Cambridge, United Kingdom, 2017–2022
  • MSc Interdisciplinary Sciences (Chemistry and Molecular Biology), ETH Zurich, Switzerland, 2014–2017
  • BSc Interdisciplinary Sciences (Biochemical Physical Pathway), ETH Zurich, Switzerland, 2011–2014

Major Awards

  • Marie Skłodowska-Curie Actions Fellowship, 2024
  • Junior Research Fellowship, Magdalene College, Cambridge, 2021–2024
  • Boehringer Ingelheim Fonds PhD Fellowship, 2018–2020

Research

Branco Weiss Fellow Since
2024

Research Category
Plant Biology, Synthetic Genomics, Molecular Biology

Research Location
Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany

Background

The genetic code is nearly universal among all living organisms. In this code, 64 codons encode 20 amino acids, as well as start and stop functions. Multiple synonymous codons encode the same function, resulting in a high degree of redundancy.

Rapid advancements in DNA reading and writing technologies have enabled synthetic biologists to generate new life forms with genomes written in reinvented genetic codes. These genomes are designed by streamlining the genetic code through codon compression, encoding the 20 amino acids with fewer than 64 codons and freeing up codons for novel functions. By reassigning these free codons to different amino acids, the synthetic codes can be made incompatible with the original code, thereby preventing the transfer of genetic information between natural and engineered organisms.

To date, only a single-celled organism has been created with an isolated genetic code. Given the central role plants play in our food system and as natural carbon fixation sinks, genetically modified plants are a particularly important target for bio-contained, genome-scale engineering.

Details of Research

The chloroplast is the photosynthetic center of the plant. Chloroplasts have their own small genomes and have emerged as a testbed for synthetic biology in plants. By developing methods to design and implement artificial chloroplast genomes, written in a genetic code incompatible with the natural one, the benefits of highly engineered plants may be aligned with the goal of conserving the natural world.